PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 219aa    MW: 23848.4 Da    PI: 4.6482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4617genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-303593259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver++ dp+v+ +tY+++Hnh 
  Tp57577_TGAC_v2_mRNA4617 35 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkSCPARKQVERNHVDPTVLLVTYTSDHNHA 93
                              69*************************998****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-302995IPR003657WRKY domain
SuperFamilySSF1182902.09E-253195IPR003657WRKY domain
SMARTSM007742.0E-333494IPR003657WRKY domain
PROSITE profilePS5081130.9513595IPR003657WRKY domain
PfamPF031064.9E-253692IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MERSSLSSSA KRRGIKKRVV EIPMKDVEGT NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC  60
SSSKSCPARK QVERNHVDPT VLLVTYTSDH NHAVPAPRNY RNTSNAAASN KDSESEQEPE  120
TEPEERFTDL GEEPLISPTD ELGGWLGEVD AIASPAGLEC PVFSEAEVSM LGEEEMSLFA  180
DLGELPECSP VFWRGRRSSD GGAGDVSVGP LVEANCSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-1735951574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462609.11e-132WRKY family transcription factor
SwissprotQ9LP562e-56WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A072V5L01e-132A0A072V5L0_MEDTR; Uncharacterized protein
STRINGGLYMA08G12460.13e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-56WRKY DNA-binding protein 65